Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs12292117 chr11:24216739 C/A 5.2E-9 494 30.8 37.47 22.92 KM Plot
PRAD rs12292949 chr11:72457531 C/T 5.24E-5 480 30.53 33.88 21.9 KM Plot
PRAD rs12293592 chr11:24224433 A/C 6.29E-5 492 30.73 38.65 24.9 KM Plot
PRAD rs12294118 chr11:24212083 C/T 2.94E-8 493 30.97 31.4 20.93 KM Plot
PRAD rs12301300 chr12:768377 C/T 7.44E-5 492 31.03 31 29.17 KM Plot
PRAD rs12303868 chr12:768367 A/G 7.44E-5 492 31.03 31 29.17 KM Plot
PRAD rs12307171 chr12:768874 C/T 0.000124 494 28.87 31.23 31.13 KM Plot
PRAD rs1230946 chr16:3407682 C/G 1.52E-5 494 26.37 35.47 28.8 KM Plot
PRAD rs12339187 chr9:137229327 C/T 1.22E-5 494 29.22 28.57 32.5 KM Plot
PRAD rs12353112 chr9:133765872 A/G 5.9E-5 494 20.93 33.07 30.75 KM Plot
PRAD rs12354763 chr10:131791132 C/T 7.21E-6 476 32 29.1 26.37 KM Plot
PRAD rs12357082 chr10:99402378 C/A 5.76E-6 492 31.27 29.13 24.67 KM Plot
PRAD rs12360261 chr10:94783360 A/G 0.000134 485 30.23 32.5 59.8 KM Plot
PRAD rs12369036 chr12:731402 C/T 0.000148 490 31.33 28.13 22.67 KM Plot
PRAD rs12372925 chr15:82562506 T/C 8.97E-6 478 30.12 36.47 36.65 KM Plot